ALMaSS: /builds/a1mass/almass_stable_oddox/Newt/Newt_Population

The main source code for the newt population manager classes More...

#include <string.h>
#include <iostream>
#include <fstream>
#include <vector>
#include "../BatchALMaSS/ALMaSS_Setup.h"
#include "../ALMaSSDefines.h"
#include "../Landscape/ls.h"
#include "../BatchALMaSS/PopulationManager.h"
#include "../BatchALMaSS/AOR_Probe.h"
#include "../Newt/Newt.h"
#include "../Newt/Newt_Population_Manager.h"

Variables
CfgBool	cfg_RipleysOutput_used

CfgBool	cfg_ReallyBigOutput_used

CfgBool	cfg_AOROutput_used

static CfgFloat	cfg_NewtEggDevelTotal ("NEWT_EGG_DEVELTOTAL", CFG_CUSTOM, 900)
	Newt model input parameter - The sum of day degrees above NEWT_EGG_DEVELTHRESHOLD before an egg hatches. Default value is 900 fitted to T.carnifex data from D'Amesn et al (2007), but adjusted to get the correct development rate. More...

static CfgFloat	cfg_NewtEggDevelDDParameter ("NEWT_EGG_DEVELDDPARAMETER", CFG_CUSTOM, -0.534)
	Newt model input parameter - The temperature slope for egg development change with temperature. Default value is -0.534 fitted to T.carnifex data from D'Amesn et al (2007). More...

static CfgFloat	cfg_NewtJuvenileDevelSize ("NEWT_JUVENILE_DEVELSIZE", CFG_CUSTOM, 42.0+21.9)
	Newt model input parameter - the length needed to be achieved before a juvenile matures, from Baker (1998) More...

static CfgFloat	cfg_NewtJuvenileDailyLengthGain ("NEWT_JUVENILEDAILYLENGTHGAIN", CFG_CUSTOM, 0.047827)
	Newt model input parameter - If temperature is above the NEWT_DORMANCYTEMP the newt grows by this many mm per day and free-living stages can move. More...

static CfgFloat	cfg_NewtNARMortalityFactor ("NEWT_NAR_MORTALITYFACTOR", CFG_CUSTOM, 0.0016)
	Newt model input parameter - This is the per mm decrease in survival in non-aquatic rainfall (from Griffiths et al, 2010). More...

static CfgFloat	cfg_NewtWTMortalityFactor ("NEWT_WT_MORTALITYFACTOR", CFG_CUSTOM, 0.10)
	Newt model input parameter - This is the per degree decrease in survival in winter minimum temp (from Griffiths et al, 2010). More...

static CfgFloat	cfg_NewtRoadMortalityProb ("NEWT_ROADMORTALITYPROB", CFG_CUSTOM, 0.9/18.0)
	Newt model input parameter - Chance of mortality per road crossing (0.45 for typical road, 0.9 for busy road Hels&Buchwald 2001). This is divided by road width for small road 0.9/18, assuming it is a large busy road. More...

static CfgInt	cfg_NewtWalkSpeed ("ENWT_WALKSPEED", CFG_CUSTOM, 20)
	Newt model input parameter - This is the number of m moved per day. More...

static CfgInt	cfg_breedingseasonstart ("NEWT_BREEDINGSEASONSTART", CFG_CUSTOM, March)
	Newt model input parameter - First possible breeding season date Griffiths et al (2010) & Langton et al (2001) More...

static CfgInt	cfg_breedingseasonend ("NEWT_BREEDINGSEASONEND", CFG_CUSTOM, June)
	Newt model input parameter - Last possible breeding season date Griffiths et al (2010) & Langton et al (2001) More...

static CfgInt	cfg_NewtAdultLifespan ("NEWT_ADULTLIFESPAN", CFG_CUSTOM, 365 *14)
	Newt model input parameter - The maximum lifespan in days for an adult (including egg and larval stages), set at 14 yrs (Francillon-Vieillot et al, 1990) More...

static CfgFloat	cfg_newtdormancytemp ("NEWT_DORMANCYTEMP", CFG_CUSTOM, 22.5)
	Newt model input parameter - The temperature at which freeliving stages are dormant (do not move more than within their current 1m cell). Summed over previous 5 days. Default value based on Langton et al (2001) More...

static CfgInt	cfg_newteggproductionvolume ("NEWT_EGGPRODUCTIONVOLUME", CFG_CUSTOM, 100)
	Newt model input parameter - Total number of eggs produced per breeding season Default value is 200 based on Arntzen & Teunis 1993, but halved because Macgregor, H. C. and H. Horner (1980) suggests 50% are non-viable. More...

static CfgInt	cfg_newtdailyeggproductionvolume ("NEWT_EGGDAILYPRODUCTIONVOLUME", CFG_CUSTOM, 5)
	Newt model input parameter - The number of eggs laid per day when breeding. Estimated based on Langton et al (2001) More...

static CfgFloat	cfg_NewtLarvaDevelThresholdUpperSz ("NEWT_LARVA_DEVELTHRESHOLDUPPERSZ", CFG_CUSTOM, 42.3)
	Newt model input parameter - the upper size at which larvae will undergo metamorphosis. More...

static CfgFloat	cfg_NewtLarvaDailyGrowthIncrement ("NEWT_LARVA_DAILYGROWTHINCREMENT", CFG_CUSTOM,(42.3 - 1.0)/(12 *7.0))
	Newt model input parameter - the daily increment assuming a linear growth model to the juvenile start length. Is 42mm - start length of 1mm divided by 12 development weeks. More...

static CfgFloat	cfg_NewtLarvaDevelThresholdTime ("NEWT_LARVA_DEVELTHRESHOLDTIME", CFG_CUSTOM, 12 *7)
	Newt model input parameter - the development time at which the larva will undergo metamorphosis if its size is between cfg_NewtLarvaDevelThresholdUpperSz and cfg_NewtLarvaDevelThresholdLowerSz thresholds. More...

static CfgFloat	cfg_newtdormancyhumidity ("NEWT_DORMANCYHUMIDITY", CFG_CUSTOM, 0.003125)
	Newt model input parameter - The preciptitation needed for newt movement (over last two days) More...

static CfgFloat	cfg_newtgoodhabitatdispersalprob ("NEWT_GOODHABITATDISPPROB", CFG_CUSTOM, 0.25, 0.0, 1.0)
	Newt model input parameter - The daily probability of dispersal in good habitat if weather is suitable (temp and precipication). Needed to be set to keep 64% of newts within 20 m of the pond (Jehle & Arntzen, 2000) and 95% within 50m (Jehle, 2000) More...

static CfgFloat	cfg_newtpoorhabitatdispersalprob ("NEWT_POORHABITATDISPPROB", CFG_CUSTOM, 1.0)
	Newt model input parameter - The daily probability of dispersal in poor habitat if weather is suitable (temp and precipication). habitat preference (LOCS/AREA 0.5 for open 9.5 for hedgerow) (Jehle & Arntzen, 2000) More...

static CfgFloat	cfg_NewtEggMortalityChance ("NEWT_EGG_MORTALITYCHANCE", CFG_CUSTOM, 0.048)
	Newt model input parameter - Daily egg mortality probability, fitted to 75% mortality by 4 weeks. More...

static CfgFloat	cfg_NewtLarvaMortalityChance ("NEWT_LARVAL_MORTALITYCHANCE", CFG_CUSTOM, 0.015)
	Newt model input parameter - Daily larval mortality probability, excluding density dependent mortality. Fitted to 5% survival from egg to juvenile stage. More...

static CfgFloat	cfg_LarvalFoodProportion ("NEWT_LARVALFOODPROPCONST", CFG_CUSTOM, 0.01)
	Newt model input parameter - This multiplied by its age is the larval food consumption g of food per day. More...

static CfgFloat	cfg_NewtEggPPPToxTrigger ("NEWT_EGG_PPP_TOX_TRIGGER", CFG_CUSTOM, 9999.999)
	Pesticide input parameter - the mg of pesticicde assumed to trigger a response in embryonic newts. More...

static CfgFloat	cfg_NewtLarvaPPPToxTrigger ("NEWT_LARVA_PPP_TOX_TRIGGER", CFG_CUSTOM, 9999.999)
	Pesticide input parameter - the mg of pesticicde assumed to trigger a response in larval newts. More...

static CfgFloat	cfg_NewtJuvenilePPPToxTrigger_EnvConc ("NEWT_JUVENILE_PPP_TOX_TRIGGER_ENVCONC", CFG_CUSTOM, 9999.999)
	Pesticide input parameter - the mg of pesticicde assumed to trigger a response in juvenile newts. More...

static CfgFloat	cfg_NewtJuvenilePPPToxTrigger_Overspray ("NEWT_JUVENILE_PPP_TOX_TRIGGER_ENVCONC", CFG_CUSTOM, 9999.999)
	Pesticide input parameter - the mg of pesticicde assumed to trigger a response in juvenile newts for overspray. More...

static CfgFloat	cfg_NewtAdultPPPToxTrigger ("NEWT_ADULT_PPP_TOX_TRIGGER", CFG_CUSTOM, 9999.999)
	Pesticide input parameter - the mg of pesticicde assumed to trigger a response in adult newts. More...

static CfgFloat	cfg_NewtEggPPPToxEliminationRate ("NEWT_EGG_PPP_TOX_ELIMINATIONRATE", CFG_CUSTOM, 0.0)
	Pesticide input parameter - One minus the proportion of internal PPP eliminated each day in embryonic newts. More...

static CfgFloat	cfg_NewtLarvaPPPToxEliminationRate ("NEWT_LARVA_PPP_TOX_ELIMINATIONRATE", CFG_CUSTOM, 0.0)
	Pesticide input parameter - One minus the proportion of internal PPP eliminated each day in larval newts. More...

static CfgFloat	cfg_NewtJuvenilePPPToxEliminationRate ("NEWT_JUVENILE_PPP_TOX_ELIMINATIONRATE", CFG_CUSTOM, 0.0)
	Pesticide input parameter - One minus the proportion of internal PPP eliminated each day in juvenile newts. More...

static CfgFloat	cfg_NewtAdultPPPToxEliminationRate ("NEWT_ADULT_PPP_TOX_ELIMINATIONRATE", CFG_CUSTOM, 0.0)
	Pesticide input parameter - One minus the proportion of internal PPP eliminated each day in adult newts. More...

static CfgFloat	cfg_NewtEggPPPEffectProbability ("NEWT_EGG_PPP_TOX_EFFECTPROBABILITY", CFG_CUSTOM, 0.0)
	Pesticide input parameter - daily probability of mortality if above a trigger dose. More...

static CfgFloat	cfg_NewtLarvaPPPEffectProbability ("NEWT_LARVA_PPP_TOX_EFFECTPROBABILITY", CFG_CUSTOM, 0.0)
	Pesticide input parameter - daily probability of mortality if above a trigger dose. More...

static CfgFloat	cfg_NewtJuvenilePPPEffectProbability_EnvConc ("NEWT_JUV_PPP_TOX_EFFECTPROBABILITY_ENVCONC", CFG_CUSTOM, 0.0)
	Pesticide input parameter - daily probability of mortality if above a trigger dose. More...

static CfgFloat	cfg_NewtJuvenilePPPEffectProbability_Overspray ("NEWT_JUV_PPP_TOX_EFFECTPROBABILITY_OVERSPRAY", CFG_CUSTOM, 0.0)
	Pesticide input parameter - daily probability of mortality if above a trigger dose. More...

static CfgFloat	cfg_NewtAdultPPPEffectProbability ("NEWT_ADULT_PPP_TOX_EFFECTPROBABILITY", CFG_CUSTOM, 0.0)
	Pesticide input parameter - daily probability of mortality if above a trigger dose. More...

static CfgInt	cfg_NewtWalkStepsize ("NEWT_WALKSSTEPSIZE", CFG_CUSTOM, 1)
	Newt model input parameter - This is the step size the newt can take in the model (can be set >1 to speed model up) More...

static CfgFloat	cfg_NewtLarvaDevelThresholdLowerSz ("NEWT_LARVA_DEVELTHRESHOLDLOWERSZ", CFG_CUSTOM, 42.3)
	Newt model input parameter - the lower size at which larvae CANNOT undergo metamorphosis. More...

static CfgInt	cfg_newt_startnumber ("NEWT_STARTNUMBER", CFG_CUSTOM, 1000)
	The starting numbers for male and female newts. More...

static CfgBool	cfg_Newt_Test_Pesticide_Egg ("NEWT_TEST_PESTICIDE_EGG", CFG_CUSTOM, false)
	Denotes whether pesticide testing mode is active for eggs - needs to be set to true to evaluate PPP impacts. More...

static CfgBool	cfg_Newt_Test_Pesticide_Larva ("NEWT_TEST_PESTICIDE_LARVA", CFG_CUSTOM, false)
	Denotes whether pesticide testing mode is active for larvae - needs to be set to true to evaluate PPP impacts. More...

static CfgBool	cfg_Newt_Test_Pesticide_Terrestrial ("NEWT_TEST_PESTICIDE_TERRESTRIAL", CFG_CUSTOM, false)
	Denotes whether pesticide testing mode is active for adults - needs to be set to true to evaluate PPP impacts. More...

Detailed Description

The main source code for the newt population manager classes

Version of 1 January 2016
By Chris J. Topping

Variable Documentation

◆ cfg_AOROutput_used

CfgBool cfg_AOROutput_used

extern

◆ cfg_breedingseasonend

CfgInt cfg_breedingseasonend("NEWT_BREEDINGSEASONEND", CFG_CUSTOM, June)	(	"NEWT_BREEDINGSEASONEND"	,
		CFG_CUSTOM	,
		June
	)

static

Newt model input parameter - Last possible breeding season date Griffiths et al (2010) & Langton et al (2001)

Referenced by Newt_Population_Manager::DoFirst().

◆ cfg_breedingseasonstart

CfgInt cfg_breedingseasonstart("NEWT_BREEDINGSEASONSTART", CFG_CUSTOM, March)	(	"NEWT_BREEDINGSEASONSTART"	,
		CFG_CUSTOM	,
		March
	)

static

Newt model input parameter - First possible breeding season date Griffiths et al (2010) & Langton et al (2001)

Referenced by Newt_Population_Manager::DoFirst().

◆ cfg_LarvalFoodProportion

CfgFloat cfg_LarvalFoodProportion("NEWT_LARVALFOODPROPCONST", CFG_CUSTOM, 0.01)	(	"NEWT_LARVALFOODPROPCONST"	,
		CFG_CUSTOM	,
		0.	01
	)

static

Newt model input parameter - This multiplied by its age is the larval food consumption g of food per day.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_newt_startnumber

CfgInt cfg_newt_startnumber("NEWT_STARTNUMBER", CFG_CUSTOM, 1000)	(	"NEWT_STARTNUMBER"	,
		CFG_CUSTOM	,
		1000
	)

static

The starting numbers for male and female newts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_Newt_Test_Pesticide_Egg

CfgBool cfg_Newt_Test_Pesticide_Egg("NEWT_TEST_PESTICIDE_EGG", CFG_CUSTOM, false)	(	"NEWT_TEST_PESTICIDE_EGG"	,
		CFG_CUSTOM	,
		false
	)

static

Denotes whether pesticide testing mode is active for eggs - needs to be set to true to evaluate PPP impacts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_Newt_Test_Pesticide_Larva

CfgBool cfg_Newt_Test_Pesticide_Larva("NEWT_TEST_PESTICIDE_LARVA", CFG_CUSTOM, false)	(	"NEWT_TEST_PESTICIDE_LARVA"	,
		CFG_CUSTOM	,
		false
	)

static

Denotes whether pesticide testing mode is active for larvae - needs to be set to true to evaluate PPP impacts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_Newt_Test_Pesticide_Terrestrial

CfgBool cfg_Newt_Test_Pesticide_Terrestrial("NEWT_TEST_PESTICIDE_TERRESTRIAL", CFG_CUSTOM, false)	(	"NEWT_TEST_PESTICIDE_TERRESTRIAL"	,
		CFG_CUSTOM	,
		false
	)

static

Denotes whether pesticide testing mode is active for adults - needs to be set to true to evaluate PPP impacts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtAdultLifespan

CfgInt cfg_NewtAdultLifespan("NEWT_ADULTLIFESPAN", CFG_CUSTOM, 365 *14)	(	"NEWT_ADULTLIFESPAN"	,
		CFG_CUSTOM	,
		365 *	14
	)

static

Newt model input parameter - The maximum lifespan in days for an adult (including egg and larval stages), set at 14 yrs (Francillon-Vieillot et al, 1990)

◆ cfg_NewtAdultPPPEffectProbability

CfgFloat cfg_NewtAdultPPPEffectProbability("NEWT_ADULT_PPP_TOX_EFFECTPROBABILITY", CFG_CUSTOM, 0.0)	(	"NEWT_ADULT_PPP_TOX_EFFECTPROBABILITY"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Pesticide input parameter - daily probability of mortality if above a trigger dose.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtAdultPPPToxEliminationRate

CfgFloat cfg_NewtAdultPPPToxEliminationRate("NEWT_ADULT_PPP_TOX_ELIMINATIONRATE", CFG_CUSTOM, 0.0)	(	"NEWT_ADULT_PPP_TOX_ELIMINATIONRATE"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Pesticide input parameter - One minus the proportion of internal PPP eliminated each day in adult newts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtAdultPPPToxTrigger

CfgFloat cfg_NewtAdultPPPToxTrigger("NEWT_ADULT_PPP_TOX_TRIGGER", CFG_CUSTOM, 9999.999)	(	"NEWT_ADULT_PPP_TOX_TRIGGER"	,
		CFG_CUSTOM	,
		9999.	999
	)

static

Pesticide input parameter - the mg of pesticicde assumed to trigger a response in adult newts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_newtdailyeggproductionvolume

CfgInt cfg_newtdailyeggproductionvolume("NEWT_EGGDAILYPRODUCTIONVOLUME", CFG_CUSTOM, 5)	(	"NEWT_EGGDAILYPRODUCTIONVOLUME"	,
		CFG_CUSTOM	,
		5
	)

static

Newt model input parameter - The number of eggs laid per day when breeding. Estimated based on Langton et al (2001)

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_newtdormancyhumidity

CfgFloat cfg_newtdormancyhumidity("NEWT_DORMANCYHUMIDITY", CFG_CUSTOM, 0.003125)	(	"NEWT_DORMANCYHUMIDITY"	,
		CFG_CUSTOM	,
		0.	003125
	)

static

Newt model input parameter - The preciptitation needed for newt movement (over last two days)

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_newtdormancytemp

CfgFloat cfg_newtdormancytemp("NEWT_DORMANCYTEMP", CFG_CUSTOM, 22.5)	(	"NEWT_DORMANCYTEMP"	,
		CFG_CUSTOM	,
		22.	5
	)

static

Newt model input parameter - The temperature at which freeliving stages are dormant (do not move more than within their current 1m cell). Summed over previous 5 days. Default value based on Langton et al (2001)

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtEggDevelDDParameter

CfgFloat cfg_NewtEggDevelDDParameter("NEWT_EGG_DEVELDDPARAMETER", CFG_CUSTOM, -0.534)	(	"NEWT_EGG_DEVELDDPARAMETER"	,
		CFG_CUSTOM	,
		-0.	534
	)

static

Newt model input parameter - The temperature slope for egg development change with temperature. Default value is -0.534 fitted to T.carnifex data from D'Amesn et al (2007).

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtEggDevelTotal

CfgFloat cfg_NewtEggDevelTotal("NEWT_EGG_DEVELTOTAL", CFG_CUSTOM, 900)	(	"NEWT_EGG_DEVELTOTAL"	,
		CFG_CUSTOM	,
		900
	)

static

Newt model input parameter - The sum of day degrees above NEWT_EGG_DEVELTHRESHOLD before an egg hatches. Default value is 900 fitted to T.carnifex data from D'Amesn et al (2007), but adjusted to get the correct development rate.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtEggMortalityChance

CfgFloat cfg_NewtEggMortalityChance("NEWT_EGG_MORTALITYCHANCE", CFG_CUSTOM, 0.048)	(	"NEWT_EGG_MORTALITYCHANCE"	,
		CFG_CUSTOM	,
		0.	048
	)

static

Newt model input parameter - Daily egg mortality probability, fitted to 75% mortality by 4 weeks.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtEggPPPEffectProbability

CfgFloat cfg_NewtEggPPPEffectProbability("NEWT_EGG_PPP_TOX_EFFECTPROBABILITY", CFG_CUSTOM, 0.0)	(	"NEWT_EGG_PPP_TOX_EFFECTPROBABILITY"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Pesticide input parameter - daily probability of mortality if above a trigger dose.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtEggPPPToxEliminationRate

CfgFloat cfg_NewtEggPPPToxEliminationRate("NEWT_EGG_PPP_TOX_ELIMINATIONRATE", CFG_CUSTOM, 0.0)	(	"NEWT_EGG_PPP_TOX_ELIMINATIONRATE"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Pesticide input parameter - One minus the proportion of internal PPP eliminated each day in embryonic newts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtEggPPPToxTrigger

CfgFloat cfg_NewtEggPPPToxTrigger("NEWT_EGG_PPP_TOX_TRIGGER", CFG_CUSTOM, 9999.999)	(	"NEWT_EGG_PPP_TOX_TRIGGER"	,
		CFG_CUSTOM	,
		9999.	999
	)

static

Pesticide input parameter - the mg of pesticicde assumed to trigger a response in embryonic newts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_newteggproductionvolume

CfgInt cfg_newteggproductionvolume("NEWT_EGGPRODUCTIONVOLUME", CFG_CUSTOM, 100)	(	"NEWT_EGGPRODUCTIONVOLUME"	,
		CFG_CUSTOM	,
		100
	)

static

Newt model input parameter - Total number of eggs produced per breeding season Default value is 200 based on Arntzen & Teunis 1993, but halved because Macgregor, H. C. and H. Horner (1980) suggests 50% are non-viable.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_newtgoodhabitatdispersalprob

CfgFloat cfg_newtgoodhabitatdispersalprob("NEWT_GOODHABITATDISPPROB", CFG_CUSTOM, 0.25, 0.0, 1.0)	(	"NEWT_GOODHABITATDISPPROB"	,
		CFG_CUSTOM	,
		0.	25,
		0.	0,
		1.	0
	)

static

Newt model input parameter - The daily probability of dispersal in good habitat if weather is suitable (temp and precipication). Needed to be set to keep 64% of newts within 20 m of the pond (Jehle & Arntzen, 2000) and 95% within 50m (Jehle, 2000)

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtJuvenileDailyLengthGain

CfgFloat cfg_NewtJuvenileDailyLengthGain("NEWT_JUVENILEDAILYLENGTHGAIN", CFG_CUSTOM, 0.047827)	(	"NEWT_JUVENILEDAILYLENGTHGAIN"	,
		CFG_CUSTOM	,
		0.	047827
	)

static

Newt model input parameter - If temperature is above the NEWT_DORMANCYTEMP the newt grows by this many mm per day and free-living stages can move.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtJuvenileDevelSize

CfgFloat cfg_NewtJuvenileDevelSize("NEWT_JUVENILE_DEVELSIZE", CFG_CUSTOM, 42.0+21.9)	(	"NEWT_JUVENILE_DEVELSIZE"	,
		CFG_CUSTOM	,
		42.0+21.	9
	)

static

Newt model input parameter - the length needed to be achieved before a juvenile matures, from Baker (1998)

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtJuvenilePPPEffectProbability_EnvConc

CfgFloat cfg_NewtJuvenilePPPEffectProbability_EnvConc("NEWT_JUV_PPP_TOX_EFFECTPROBABILITY_ENVCONC", CFG_CUSTOM, 0.0)	(	"NEWT_JUV_PPP_TOX_EFFECTPROBABILITY_ENVCONC"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Pesticide input parameter - daily probability of mortality if above a trigger dose.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtJuvenilePPPEffectProbability_Overspray

CfgFloat cfg_NewtJuvenilePPPEffectProbability_Overspray("NEWT_JUV_PPP_TOX_EFFECTPROBABILITY_OVERSPRAY", CFG_CUSTOM, 0.0)	(	"NEWT_JUV_PPP_TOX_EFFECTPROBABILITY_OVERSPRAY"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Pesticide input parameter - daily probability of mortality if above a trigger dose.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtJuvenilePPPToxEliminationRate

CfgFloat cfg_NewtJuvenilePPPToxEliminationRate("NEWT_JUVENILE_PPP_TOX_ELIMINATIONRATE", CFG_CUSTOM, 0.0)	(	"NEWT_JUVENILE_PPP_TOX_ELIMINATIONRATE"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Pesticide input parameter - One minus the proportion of internal PPP eliminated each day in juvenile newts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtJuvenilePPPToxTrigger_EnvConc

CfgFloat cfg_NewtJuvenilePPPToxTrigger_EnvConc("NEWT_JUVENILE_PPP_TOX_TRIGGER_ENVCONC", CFG_CUSTOM, 9999.999)	(	"NEWT_JUVENILE_PPP_TOX_TRIGGER_ENVCONC"	,
		CFG_CUSTOM	,
		9999.	999
	)

static

Pesticide input parameter - the mg of pesticicde assumed to trigger a response in juvenile newts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtJuvenilePPPToxTrigger_Overspray

CfgFloat cfg_NewtJuvenilePPPToxTrigger_Overspray("NEWT_JUVENILE_PPP_TOX_TRIGGER_ENVCONC", CFG_CUSTOM, 9999.999)	(	"NEWT_JUVENILE_PPP_TOX_TRIGGER_ENVCONC"	,
		CFG_CUSTOM	,
		9999.	999
	)

static

Pesticide input parameter - the mg of pesticicde assumed to trigger a response in juvenile newts for overspray.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtLarvaDailyGrowthIncrement

CfgFloat cfg_NewtLarvaDailyGrowthIncrement("NEWT_LARVA_DAILYGROWTHINCREMENT", CFG_CUSTOM,(42.3 - 1.0)/(12 *7.0))	(	"NEWT_LARVA_DAILYGROWTHINCREMENT"	,
		CFG_CUSTOM	,
		(42.3 - 1.0)/(12 *7.0)
	)

static

Newt model input parameter - the daily increment assuming a linear growth model to the juvenile start length. Is 42mm - start length of 1mm divided by 12 development weeks.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtLarvaDevelThresholdLowerSz

CfgFloat cfg_NewtLarvaDevelThresholdLowerSz("NEWT_LARVA_DEVELTHRESHOLDLOWERSZ", CFG_CUSTOM, 42.3)	(	"NEWT_LARVA_DEVELTHRESHOLDLOWERSZ"	,
		CFG_CUSTOM	,
		42.	3
	)

static

Newt model input parameter - the lower size at which larvae CANNOT undergo metamorphosis.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtLarvaDevelThresholdTime

CfgFloat cfg_NewtLarvaDevelThresholdTime("NEWT_LARVA_DEVELTHRESHOLDTIME", CFG_CUSTOM, 12 *7)	(	"NEWT_LARVA_DEVELTHRESHOLDTIME"	,
		CFG_CUSTOM	,
		12 *	7
	)

static

Newt model input parameter - the development time at which the larva will undergo metamorphosis if its size is between cfg_NewtLarvaDevelThresholdUpperSz and cfg_NewtLarvaDevelThresholdLowerSz thresholds.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtLarvaDevelThresholdUpperSz

CfgFloat cfg_NewtLarvaDevelThresholdUpperSz("NEWT_LARVA_DEVELTHRESHOLDUPPERSZ", CFG_CUSTOM, 42.3)	(	"NEWT_LARVA_DEVELTHRESHOLDUPPERSZ"	,
		CFG_CUSTOM	,
		42.	3
	)

static

Newt model input parameter - the upper size at which larvae will undergo metamorphosis.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtLarvaMortalityChance

CfgFloat cfg_NewtLarvaMortalityChance("NEWT_LARVAL_MORTALITYCHANCE", CFG_CUSTOM, 0.015)	(	"NEWT_LARVAL_MORTALITYCHANCE"	,
		CFG_CUSTOM	,
		0.	015
	)

static

Newt model input parameter - Daily larval mortality probability, excluding density dependent mortality. Fitted to 5% survival from egg to juvenile stage.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtLarvaPPPEffectProbability

CfgFloat cfg_NewtLarvaPPPEffectProbability("NEWT_LARVA_PPP_TOX_EFFECTPROBABILITY", CFG_CUSTOM, 0.0)	(	"NEWT_LARVA_PPP_TOX_EFFECTPROBABILITY"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Pesticide input parameter - daily probability of mortality if above a trigger dose.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtLarvaPPPToxEliminationRate

CfgFloat cfg_NewtLarvaPPPToxEliminationRate("NEWT_LARVA_PPP_TOX_ELIMINATIONRATE", CFG_CUSTOM, 0.0)	(	"NEWT_LARVA_PPP_TOX_ELIMINATIONRATE"	,
		CFG_CUSTOM	,
		0.	0
	)

static

Pesticide input parameter - One minus the proportion of internal PPP eliminated each day in larval newts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtLarvaPPPToxTrigger

CfgFloat cfg_NewtLarvaPPPToxTrigger("NEWT_LARVA_PPP_TOX_TRIGGER", CFG_CUSTOM, 9999.999)	(	"NEWT_LARVA_PPP_TOX_TRIGGER"	,
		CFG_CUSTOM	,
		9999.	999
	)

static

Pesticide input parameter - the mg of pesticicde assumed to trigger a response in larval newts.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtNARMortalityFactor

CfgFloat cfg_NewtNARMortalityFactor("NEWT_NAR_MORTALITYFACTOR", CFG_CUSTOM, 0.0016)	(	"NEWT_NAR_MORTALITYFACTOR"	,
		CFG_CUSTOM	,
		0.	0016
	)

static

Newt model input parameter - This is the per mm decrease in survival in non-aquatic rainfall (from Griffiths et al, 2010).

Referenced by Newt_Population_Manager::SetFreeLivingMortChance().

◆ cfg_newtpoorhabitatdispersalprob

CfgFloat cfg_newtpoorhabitatdispersalprob("NEWT_POORHABITATDISPPROB", CFG_CUSTOM, 1.0)	(	"NEWT_POORHABITATDISPPROB"	,
		CFG_CUSTOM	,
		1.	0
	)

static

Newt model input parameter - The daily probability of dispersal in poor habitat if weather is suitable (temp and precipication). habitat preference (LOCS/AREA 0.5 for open 9.5 for hedgerow) (Jehle & Arntzen, 2000)

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtRoadMortalityProb

CfgFloat cfg_NewtRoadMortalityProb("NEWT_ROADMORTALITYPROB", CFG_CUSTOM, 0.9/18.0)	(	"NEWT_ROADMORTALITYPROB"	,
		CFG_CUSTOM	,
		0.9/18.	0
	)

static

Newt model input parameter - Chance of mortality per road crossing (0.45 for typical road, 0.9 for busy road Hels&Buchwald 2001). This is divided by road width for small road 0.9/18, assuming it is a large busy road.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtWalkSpeed

CfgInt cfg_NewtWalkSpeed("ENWT_WALKSPEED", CFG_CUSTOM, 20)	(	"ENWT_WALKSPEED"	,
		CFG_CUSTOM	,
		20
	)

static

Newt model input parameter - This is the number of m moved per day.

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtWalkStepsize

CfgInt cfg_NewtWalkStepsize("NEWT_WALKSSTEPSIZE", CFG_CUSTOM, 1)	(	"NEWT_WALKSSTEPSIZE"	,
		CFG_CUSTOM	,
		1
	)

static

Newt model input parameter - This is the step size the newt can take in the model (can be set >1 to speed model up)

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_NewtWTMortalityFactor

CfgFloat cfg_NewtWTMortalityFactor("NEWT_WT_MORTALITYFACTOR", CFG_CUSTOM, 0.10)	(	"NEWT_WT_MORTALITYFACTOR"	,
		CFG_CUSTOM	,
		0.	10
	)

static

Newt model input parameter - This is the per degree decrease in survival in winter minimum temp (from Griffiths et al, 2010).

Referenced by Newt_Population_Manager::SetFreeLivingMortChance().

◆ cfg_ReallyBigOutput_used

CfgBool cfg_ReallyBigOutput_used

extern

Referenced by Newt_Population_Manager::Newt_Population_Manager().

◆ cfg_RipleysOutput_used

CfgBool cfg_RipleysOutput_used

extern

Referenced by Newt_Population_Manager::Newt_Population_Manager().

Variables

Detailed Description

Variable Documentation

◆ cfg_AOROutput_used

◆ cfg_breedingseasonend

◆ cfg_breedingseasonstart

◆ cfg_LarvalFoodProportion

◆ cfg_newt_startnumber

◆ cfg_Newt_Test_Pesticide_Egg

◆ cfg_Newt_Test_Pesticide_Larva

◆ cfg_Newt_Test_Pesticide_Terrestrial

◆ cfg_NewtAdultLifespan

◆ cfg_NewtAdultPPPEffectProbability

◆ cfg_NewtAdultPPPToxEliminationRate

◆ cfg_NewtAdultPPPToxTrigger

◆ cfg_newtdailyeggproductionvolume

◆ cfg_newtdormancyhumidity

◆ cfg_newtdormancytemp

◆ cfg_NewtEggDevelDDParameter

◆ cfg_NewtEggDevelTotal

◆ cfg_NewtEggMortalityChance

◆ cfg_NewtEggPPPEffectProbability

◆ cfg_NewtEggPPPToxEliminationRate

◆ cfg_NewtEggPPPToxTrigger

◆ cfg_newteggproductionvolume

◆ cfg_newtgoodhabitatdispersalprob

◆ cfg_NewtJuvenileDailyLengthGain

◆ cfg_NewtJuvenileDevelSize

◆ cfg_NewtJuvenilePPPEffectProbability_EnvConc

◆ cfg_NewtJuvenilePPPEffectProbability_Overspray

◆ cfg_NewtJuvenilePPPToxEliminationRate

◆ cfg_NewtJuvenilePPPToxTrigger_EnvConc

◆ cfg_NewtJuvenilePPPToxTrigger_Overspray

◆ cfg_NewtLarvaDailyGrowthIncrement

◆ cfg_NewtLarvaDevelThresholdLowerSz

◆ cfg_NewtLarvaDevelThresholdTime

◆ cfg_NewtLarvaDevelThresholdUpperSz

◆ cfg_NewtLarvaMortalityChance

◆ cfg_NewtLarvaPPPEffectProbability

◆ cfg_NewtLarvaPPPToxEliminationRate

◆ cfg_NewtLarvaPPPToxTrigger

◆ cfg_NewtNARMortalityFactor

◆ cfg_newtpoorhabitatdispersalprob

◆ cfg_NewtRoadMortalityProb

◆ cfg_NewtWalkSpeed

◆ cfg_NewtWalkStepsize

◆ cfg_NewtWTMortalityFactor

◆ cfg_ReallyBigOutput_used

◆ cfg_RipleysOutput_used